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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2849260_2849439_F

Intron Information:

Intron Rank:
126341
Intron Class:
major
Intron Phase:
Intron Coordinates:
2849260 - 2849439
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTACCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTACCTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.3
0.48
1
71.5
33
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
61.5
0.22
1.8
70.37
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018064
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019316
2848562 - 2849528
967