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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2851877_2857066_R

Intron Information:

Intron Rank:
131713
Intron Class:
major
Intron Phase:
Intron Coordinates:
2851877 - 2857066
Intron Length:
5190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCCCTCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.6
0.49
1
64.8
41.4
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
46.7
-0.3
1.6
43.82
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018045
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031784
2851285 - 2858116
6832