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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2882852_2889957_R

Intron Information:

Intron Rank:
139195
Intron Class:
major
Intron Phase:
Intron Coordinates:
2882852 - 2889957
Intron Length:
7106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
100
1.12
0.4
100
0
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022356
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032929
2882569 - 2946725
64157
ENSAPLT00000027990
2882569 - 2986833
104265
ENSAPLT00000020081
2882569 - 2946725
64157
ENSAPLT00000045527
2882569 - 2958413
75845
ENSAPLT00000036266
2882569 - 2948134
65566