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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2890093_2890177_R

Intron Information:

Intron Rank:
139196
Intron Class:
major
Intron Phase:
Intron Coordinates:
2890093 - 2890177
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CACTTCTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
82.6
33.6
Major BPS
79.2
0.72
1
75
40
Major PPT
84.9
0.79
0.7
81.8
29.4
Minor 5ss
21.7
-3.3
3.8
30.8
43.1
Minor BPS
53.2
0.09
1.5
59.13
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022356
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045527
2882569 - 2958413
75845
ENSAPLT00000036266
2882569 - 2948134
65566
ENSAPLT00000032929
2882569 - 2946725
64157
ENSAPLT00000020081
2882569 - 2946725
64157