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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2890268_2914776_R

Intron Information:

Intron Rank:
139206
Intron Class:
major
Intron Phase:
Intron Coordinates:
2890268 - 2914776
Intron Length:
24509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GGCTTTTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.4
0.46
0.9
66.9
33
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
63.4
0.28
1.4
60.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022356
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032929
2882569 - 2946725
64157