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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2890268_2943019_R

Intron Information:

Intron Rank:
139197
Intron Class:
major
Intron Phase:
Intron Coordinates:
2890268 - 2943019
Intron Length:
52752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTT
5'SS Class:
major
3'SS Sequence:
TCCTTCCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GGCTTTTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
78.8
38.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.4
0.46
0.9
66.9
33
Minor 5ss
45.2
-0.5
3
65.1
46.2
Minor BPS
63.4
0.28
1.4
60.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022356
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020081
2882569 - 2946725
64157
ENSAPLT00000045527
2882569 - 2958413
75845
ENSAPLT00000036266
2882569 - 2948134
65566