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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2914839_2945817_R

Intron Information:

Intron Rank:
139207
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
2914839 - 2945817
Intron Length:
30979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
CTGTGTAAAAAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
49.7
-0
1.2
50.2
41.2
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
78.8
0.88
1.1
82.9
30.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022356
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032929
2882569 - 2946725
64157