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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2992241_2992345_R

Intron Information:

Intron Rank:
150794
Intron Class:
major
Intron Phase:
Intron Coordinates:
2992241 - 2992345
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028632
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043579
2991780 - 2992433
654