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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_302202_309061_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
302202 - 309061
Intron Length:
6860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCTTTGTATTT
Flanking Amino Acid:
PLKRFSQTLQRSISFRSDSR
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
47.4
-0.1
2.2
70.13
42.3

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042761
201438 - 317844
116407
ENSAPLT00000040149
249639 - 317529
67891
ENSAPLT00000019189
193081 - 317844
124764
ENSAPLT00000003173
288136 - 317529
29394
ENSAPLT00000046834
193615 - 317293
123679