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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3024441_3027175_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3024441 - 3027175
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ACCTTACTAACT
Flanking Amino Acid:
SSVHLANMSSGGSRRPTAKY
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75.4
0.57
1
67.8
42.5
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
49
0.01
1.9
67.67
43

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014408
3024348 - 3033834
9487