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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3028280_3028504_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3028280 - 3028504
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AATGCTTAGACT
Flanking Amino Acid:
EKYNIIEQFERCGIKTIINL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75.1
0.57
1
79.5
26.5
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
51.7
0.13
1.8
69.63
41.7

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014408
3024348 - 3033834
9487
ENSAPLT00000043920
3025830 - 3033834
8005
ENSAPLT00000024881
3025830 - 3034002
8173
ENSAPLT00000022672
3025830 - 3034617
8788
ENSAPLT00000019756
3025830 - 3034617
8788