About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3028624_3029422_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3028624 - 3029422
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATT
Flanking Amino Acid:
YLPEAFMEAGIYFYNFGWKD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.7
82.2
28
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
53.6
0.19
1.7
71.97
40.1

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024881
3025830 - 3034002
8173
ENSAPLT00000022672
3025830 - 3034617
8788
ENSAPLT00000019756
3025830 - 3034617
8788
ENSAPLT00000014408
3024348 - 3033834
9487
ENSAPLT00000043920
3025830 - 3033834
8005