Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3029561_3030169_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3029561 - 3030169

Intron Length:

609

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTATGTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

AGTTCTTCAGCT

Flanking Amino Acid:

VHCHAGLGRTGVLVACYLVF

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

80.5

0.69

0.9

41.9

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

56.9

0.29

1.8

75.72

40.8

Associated Gene:

Gene:

PTPDC1

Ensembl Gene ID:

ENSAPLG00000013824

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019756

3025830 - 3034617

8788

ENSAPLT00000014408

3024348 - 3033834

9487

ENSAPLT00000043920

3025830 - 3033834

8005

ENSAPLT00000024881

3025830 - 3034002

8173

ENSAPLT00000022672

3025830 - 3034617

8788