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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3031378_3032115_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3031378 - 3032115
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTCCCCTAAAG
Flanking Amino Acid:
EVKQKVEMWQKELNSRDGAW
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
75.7
0.58
1
75.9
26.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
60.5
0.19
1.9
71.58
40.5

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024881
3025830 - 3034002
8173
ENSAPLT00000022672
3025830 - 3034617
8788
ENSAPLT00000019756
3025830 - 3034617
8788
ENSAPLT00000014408
3024348 - 3033834
9487
ENSAPLT00000043920
3025830 - 3033834
8005