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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3032302_3034500_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3032302 - 3034500
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TATTTAACAACT
Flanking Amino Acid:
SQDALNLLRKTSLDSEDGPY
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
80
0.68
0.8
81.6
28.8
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
49
0
2
75.86
40

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022672
3025830 - 3034617
8788