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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3033835_3034500_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3033835 - 3034500
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TATTTAACAACT
Flanking Amino Acid:
LARAIKAFTKTSLDSEDGPY
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
80
0.68
0.8
81.6
28.8
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
49
0
2
75.86
40

Associated Gene:

Gene:
PTPDC1
Ensembl Gene ID:
ENSAPLG00000013824
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019756
3025830 - 3034617
8788