Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3065752_3067259_R

Intron Information:

Intron Rank:

152203

Intron Class:

major

Intron Phase:

Intron Coordinates:

3065752 - 3067259

Intron Length:

1508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCGTGACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAA

U12 Branch Point Sequence:

TGTTCGTGACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

67.7

0.44

58.3

38.4

Major PPT

65.8

0.36

1.1

58.8

46.1

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

48.2

-0.1

2.4

69.02

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029469

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043155

3064352 - 3080988

16637