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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3067370_3080175_R

Intron Information:

Intron Rank:
152204
Intron Class:
major
Intron Phase:
Intron Coordinates:
3067370 - 3080175
Intron Length:
12806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.2
0.81
0.7
82.8
27.4
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029469
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043155
3064352 - 3080988
16637