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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3080321_3080922_R

Intron Information:

Intron Rank:
152205
Intron Class:
major
Intron Phase:
Intron Coordinates:
3080321 - 3080922
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
AATTATATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATATTCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.6
0.49
1
68
42.2
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
58.5
0.26
1.6
68.34
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029469
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043155
3064352 - 3080988
16637