About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3085162_3085967_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3085162 - 3085967
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCGAG
U12 Branch Point Sequence:
CCCCCGGCCACC
Flanking Amino Acid:
LSLGIVYIKIGGFSSVVALG
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
41.9
-0.5
1.6
37.9
43.6
Major PPT
79.1
0.66
0.9
72.8
37.5
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
29.8
-1.6
2.6
34.94
41.7

Associated Gene:

Gene:
WNT7A
Ensembl Gene ID:
ENSAPLG00000013876
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014453
3085091 - 3117646
32556