About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3086195_3096976_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3086195 - 3096976

Intron Length:
10782

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTACGTTGC

5'SS Class:
major

3'SS Sequence:
GTTTTAATTTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
ACTGTTTTAATT

Flanking Amino Acid:
RTVFGKELKVGSREAAFTYA

Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.7
0.61
1.1
64.3
43.1

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
82.2
0.72
0.9
78.9
38.5

Minor 5ss
39
-1.2
3
44
43.8

Minor BPS
63.6
0.5
1.3
72.81
39.3

Associated Gene:

Gene:
WNT7A

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3085091 - 3117646
32556