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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3097249_3116691_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3097249 - 3116691
Intron Length:
19443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATG
Flanking Amino Acid:
NLHNNEAGRKILEENMKLEC
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.2
0.43
1
59.8
39.7
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
70
0.49
1.6
76.06
35.7

Associated Gene:

Gene:
WNT7A
Ensembl Gene ID:
ENSAPLG00000013876
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014453
3085091 - 3117646
32556