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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3109_6188_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3109 - 6188
Intron Length:
3080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGTTAATA
5'SS Class:
weak_major
3'SS Sequence:
TAATGCTGTAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACCAATTAATA
Flanking Amino Acid:
IAFFVDWIKQTNAIRREAVL
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1
56
36.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
48.5
-0
1.8
53.7
45.4
Minor 5ss
39
-1.2
3
45.1
43.8
Minor BPS
49.4
-0
1.8
60.56
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026708
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035506
3068 - 11172
8105