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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_313942_315417_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
313942 - 315417
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TACAATTTAAGT
Flanking Amino Acid:
HPDQQHLEEAINIIQGIVAD
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
38.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
38
-1.4
3
53.5
43.7
Minor BPS
49.5
0.04
1.8
66.59
44

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040149
249639 - 317529
67891
ENSAPLT00000019189
193081 - 317844
124764
ENSAPLT00000018679
308045 - 317293
9249
ENSAPLT00000046834
193615 - 317293
123679
ENSAPLT00000003173
288136 - 317529
29394
ENSAPLT00000042761
201438 - 317844
116407