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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_315589_315794_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
315589 - 315794
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATATTTTAACA
Flanking Amino Acid:
HGELKNNKGVKLHVFLFQEV
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.9
0.63
1
73.7
40.2
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
72.5
0.7
1.2
76.84
33.6

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018679
308045 - 317293
9249
ENSAPLT00000046834
193615 - 317293
123679
ENSAPLT00000003173
288136 - 317529
29394
ENSAPLT00000042761
201438 - 317844
116407
ENSAPLT00000040149
249639 - 317529
67891
ENSAPLT00000019189
193081 - 317844
124764