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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_327446_334674_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
327446 - 334674
Intron Length:
7229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTGCCT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
QIPRKSREKKALFQPVAVGS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
51.9
44.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.4
0.84
0.6
83.7
24.7
Minor 5ss
28.4
-2.5
3.4
40.6
45.1
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003441
327061 - 357167
30107
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344