About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3283964_3292491_R


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3283964 - 3292491

Intron Length:
8528

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAATGAGG

5'SS Class:
major

3'SS Sequence:
GATTTCTTCTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGTGAT

U12 Branch Point Sequence:
GATTACTTACCC

Flanking Amino Acid:
TMAANGRTCRDIDECAIGTH

Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.2
0.67
1
66.2
44.9

Major BPS
81.2
0.78
1.1
71.4
45.1

Major PPT
75.8
0.58
0.8
73.9
36.4

Minor 5ss
31.7
-2.1
3.1
40.2
45.5

Minor BPS
59.2
0.27
1.8
69.72
41

Associated Gene:

Gene:
FBLN2

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3282430 - 3415698
133269

3282430 - 3389444
107015