About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3298849_3299165_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3298849 - 3299165

Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTAAGTGTG

5'SS Class:
strong_major

3'SS Sequence:
TTCTTTTCACTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTAAT

U12 Branch Point Sequence:
TTTCTTTTCACT

Flanking Amino Acid:
FLQDPEGNCVDINECTSLPE

Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.1
0.9
0.9
77.9
36.8

Major BPS
94.5
1.11
0.6
92.2
14.6

Major PPT
78.8
0.65
0.8
74.7
35

Minor 5ss
36.4
-1.5
3.3
46.1
43.6

Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
FBLN2

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3282430 - 3415698
133269

3282430 - 3389444
107015