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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3301294_3308687_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3301294 - 3308687
Intron Length:
7394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
AATTGTTTAACT
Flanking Amino Acid:
TIMADGISCEDINECVTDTH
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
81.5
0.71
0.8
77.3
31.5
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
69.3
0.68
1.7
83.43
37.5

Associated Gene:

Gene:
FBLN2
Ensembl Gene ID:
ENSAPLG00000014027
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022220
3282430 - 3415698
133269