About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3314139_3317868_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3314139 - 3317868
Intron Length:
3730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTACTAATG
Flanking Amino Acid:
SDTCGGSSYKQCCDCCNLGL
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
49
-0.2
2
60.7
41.5

Associated Gene:

Gene:
FBLN2
Ensembl Gene ID:
ENSAPLG00000014027
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022220
3282430 - 3415698
133269
ENSAPLT00000014659
3282430 - 3389444
107015