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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_334821_335878_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
334821 - 335878
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CTTATTGTAACA
Flanking Amino Acid:
LVHSELLEKEFTEKRRELKF
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
73.7
0.53
1
69.1
40.6
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
50.8
0.02
2
66.81
40.3

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003441
327061 - 357167
30107
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344