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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_335972_337011_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
335972 - 337011
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GCTTGTTTAAAA
Flanking Amino Acid:
YAFLMVDRPQIQSICEKGLQ
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
80.7
0.69
0.8
75.9
32.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.7
0.14
1.9
64.9
41.7

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344
ENSAPLT00000003441
327061 - 357167
30107