Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3363301_3414136_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3363301 - 3414136

Intron Length:

50836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCATAACTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TCTTTCATAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

70.6

41.3

Major BPS

87.6

0.93

0.9

89.3

Major PPT

69.2

0.43

0.9

60.3

40.5

Minor 5ss

44.8

-0.6

2.6

56.4

Minor BPS

73.2

0.81

1.6

88.42

36.6

Associated Gene:

Gene:

FBLN2

Ensembl Gene ID:

ENSAPLG00000014027

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022220

3282430 - 3415698

133269