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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_338112_338450_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
338112 - 338450
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGTTTACAATT
Flanking Amino Acid:
GDVIVFKIIKGKMKSIYDHI
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
88.2
0.86
0.7
83.2
32
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
49.9
0.07
1.8
72.27
39.4

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344
ENSAPLT00000003441
327061 - 357167
30107