About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_340062_340752_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
340062 - 340752

Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAGAATG

5'SS Class:
strong_major

3'SS Sequence:
CATCTTAATTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTAAT

U12 Branch Point Sequence:
TCCATCTTAATT

Flanking Amino Acid:
SNSFNTERSTDKSNYTLWRG

Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
92.6
1
0.8
84.6
33.3

Major BPS
87
0.92
0.9
86.2
29.1

Major PPT
69.3
0.43
0.9
67.3
37.8

Minor 5ss
37.1
-1.5
3
48.5
47.2

Minor BPS
68.3
0.65
1.3
75.63
41.8

Associated Gene:

Gene:
TASOR

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

327061 - 357167
30107

327061 - 362404
35344

327061 - 357167
30107