About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_340859_341295_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
340859 - 341295

Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCT|GTGAGTATT

5'SS Class:
major

3'SS Sequence:
CCTTTGTCTCTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTATTTACCT

Flanking Amino Acid:
SAARPFLPCKLPEKLDVEKV

Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.4
0.58
1
80.3
34.1

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
77.1
0.61
0.8
69.3
37

Minor 5ss
39.1
-1.2
3.1
61.3
43

Minor BPS
68
0.64
1.8
88.66
36.3

Associated Gene:

Gene:
TASOR

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

327061 - 357167
30107

327061 - 362404
35344

327061 - 357167
30107