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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_341400_341524_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
341400 - 341524
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTACCACGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAACT
Flanking Amino Acid:
YKETYLGAKEVLKNGMYCSL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
62.4
0.28
1.1
59.8
41.4
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
72
0.77
1.6
86.99
39.2

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003441
327061 - 357167
30107
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344