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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_341611_363379_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
341611 - 363379
Intron Length:
21769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
AAATCTGTAACA
Flanking Amino Acid:
ILKGLSELRQLLK*
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
83.6
0.76
0.7
77.2
31.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
56.9
0.21
2
67.8
38.4

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037726
341599 - 382202
40604