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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_346080_347628_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
346080 - 347628
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCATTT
Flanking Amino Acid:
VGLEHTLRLKEASTGSVSSF
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
49.6
0.05
2
76.97
39.9

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041173
327061 - 357167
30107
ENSAPLT00000023834
327061 - 362404
35344
ENSAPLT00000003441
327061 - 357167
30107