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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3467982_3469525_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3467982 - 3469525
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATGT
Flanking Amino Acid:
AVDRGWAINVGGGFHHCSSD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.9
82.1
34.6
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
50.5
0.09
1.9
68.89
42.9

Associated Gene:

Gene:
HDAC11
Ensembl Gene ID:
ENSAPLG00000012032
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012533
3457082 - 3483655
26574