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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3474774_3480368_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3474774 - 3480368
Intron Length:
5595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGTAC
5'SS Class:
major
3'SS Sequence:
TCCCACCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GCTACATTAATT
Flanking Amino Acid:
HTRRYLNKLKWSFVVATITE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.1
59.1
36.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
71.8
0.49
0.8
65.5
30
Minor 5ss
30.6
-2.2
3.4
40.8
45.8
Minor BPS
61.8
0.45
1.7
74.87
41.7

Associated Gene:

Gene:
HDAC11
Ensembl Gene ID:
ENSAPLG00000012032
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012533
3457082 - 3483655
26574