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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3491294_3493958_F

Intron Information:

Intron Rank:
140393
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3491294 - 3493958
Intron Length:
2665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCACCTGATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTCTCATTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
57
0.16
1
55.8
39.3
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
57
0.21
1.9
69.42
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025539
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022064
3491027 - 3497096
6070