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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3491294_3495771_F

Intron Information:

Intron Rank:
140396
Intron Class:
major
Intron Phase:
Intron Coordinates:
3491294 - 3495771
Intron Length:
4478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GTACTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGTAAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
69
0.43
0.9
62.3
39.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44.3
-0.3
2.1
69.16
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025539
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022365
3490003 - 3497096
7094