Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3494429_3495771_F

Intron Information:

Intron Rank:

140394

Intron Class:

major

Intron Phase:

Intron Coordinates:

3494429 - 3495771

Intron Length:

1343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

GTACTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TTTGTAAAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

0.43

0.9

62.3

39.6

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

44.3

-0.3

2.1

69.16

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025539

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022064

3491027 - 3497096

6070