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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3515094_3517640_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3515094 - 3517640
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTT
Flanking Amino Acid:
DGFSDSHNALRILKFSESTY
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.8
0.78
0.8
81.6
30
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
50.3
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230