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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3520369_3521203_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3520369 - 3521203
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCCT
5'SS Class:
major
3'SS Sequence:
GTTTTATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTGTTTCATA
Flanking Amino Acid:
VQKIRQGKITELMMPSDQYE
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
69.2
41.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.8
0.65
1
73.8
40.8
Minor 5ss
39.3
-1.2
2.7
52
44.5
Minor BPS
49.7
-0
2.1
67.71
39.6

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230