Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3521363_3521826_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

3521363 - 3521826

Intron Length:

464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATCCTTC

5'SS Class:

strong_minor

3'SS Sequence:

ACTGAGACTTCAG|G

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGTTCCTTTACT

Flanking Amino Acid:

GQTNLVLEHKSIRMQGVSRL

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

49.8

-0

1.2

50.4

41.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

62.4

0.28

55.8

43.7

Minor 5ss

89.5

1.33

80.9

33.1

Minor BPS

80.5

1.04

1.5

93.5

34.2

Associated Gene:

Gene:

NUP210

Ensembl Gene ID:

ENSAPLG00000012355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012937

3498985 - 3566214

67230