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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3522314_3523360_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3522314 - 3523360
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATGTTTTGATT
Flanking Amino Acid:
KLSNKVYLSENIRISTKFSE
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.3
0.61
0.9
74.7
40
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
56.4
0.28
1.3
68.66
36.8

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230