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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3542379_3544153_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3542379 - 3544153
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAGAA
U12 Branch Point Sequence:
TATAGTAGAATT
Flanking Amino Acid:
SHEETQGVALVYPLLPGSVT
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
49.7
-0
1
47.1
36.1
Major PPT
73.5
0.53
0.9
67.2
39.1
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
43.6
-0.4
2
63.76
40.6

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230