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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3546133_3546442_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3546133 - 3546442
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAATCAT
5'SS Class:
major
3'SS Sequence:
TTTCCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTATTCATATTT
Flanking Amino Acid:
RINSAPQQIEVFPPFRLLPR
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
74
36.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.4
0.75
0.7
81.8
28.8
Minor 5ss
37
-1.5
3.1
49.9
40.7
Minor BPS
49.7
0.06
1.8
70.24
40.7

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230